Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFC4P35249 AL133373.2-201ENST00000623187 2828 ntBASIC20.02■□□□□ 0.79
RFC4P35249 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
RFC4P35249 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
RFC4P35249 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.02■□□□□ 0.79
RFC4P35249 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
RFC4P35249 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RFC4P35249 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
RFC4P35249 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
RFC4P35249 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC20.01■□□□□ 0.79
RFC4P35249 SLC25A24P2-201ENST00000415059 510 ntBASIC20.01■□□□□ 0.79
RFC4P35249 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 AC104306.2-201ENST00000451877 341 ntBASIC20.01■□□□□ 0.79
RFC4P35249 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.01■□□□□ 0.79
RFC4P35249 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.01■□□□□ 0.79
RFC4P35249 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.01■□□□□ 0.79
RFC4P35249 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
RFC4P35249 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.01■□□□□ 0.79
RFC4P35249 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.01■□□□□ 0.79
RFC4P35249 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RFC4P35249 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
RFC4P35249 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 FZD10-202ENST00000539839 3282 ntBASIC20.01■□□□□ 0.79
RFC4P35249 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RFC4P35249 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20■□□□□ 0.79
RFC4P35249 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 AL607033.1-201ENST00000623900 1599 ntBASIC20■□□□□ 0.79
RFC4P35249 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 AGER-206ENST00000375070 1463 ntTSL 5 BASIC20■□□□□ 0.79
RFC4P35249 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC20■□□□□ 0.79
RFC4P35249 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RFC4P35249 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20■□□□□ 0.79
RFC4P35249 CALR4P-201ENST00000431943 946 ntBASIC20■□□□□ 0.79
RFC4P35249 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20■□□□□ 0.79
RFC4P35249 GPX4-206ENST00000588919 803 ntTSL 2 BASIC20■□□□□ 0.79
RFC4P35249 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20■□□□□ 0.79
RFC4P35249 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20■□□□□ 0.79
RFC4P35249 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20■□□□□ 0.79
RFC4P35249 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20■□□□□ 0.79
RFC4P35249 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
RFC4P35249 AC005915.1-201ENST00000624912 2018 ntBASIC20■□□□□ 0.79
RFC4P35249 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20■□□□□ 0.79
RFC4P35249 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20■□□□□ 0.79
RFC4P35249 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20■□□□□ 0.79
RFC4P35249 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFC4P35249 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.99■□□□□ 0.79
RFC4P35249 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.99■□□□□ 0.79
RFC4P35249 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.99■□□□□ 0.79
RFC4P35249 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.99■□□□□ 0.79
RFC4P35249 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.99■□□□□ 0.79
RFC4P35249 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
RFC4P35249 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.99■□□□□ 0.79
RFC4P35249 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
RFC4P35249 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.99■□□□□ 0.79
RFC4P35249 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFC4P35249 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms