Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 REXO1L8P-201ENST00000604378 1897 ntBASIC12.48□□□□□ -0.41
HOXD3P31249 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 AL592424.1-201ENST00000563624 1536 ntBASIC12.47□□□□□ -0.41
HOXD3P31249 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HOXD3P31249 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
HOXD3P31249 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HOXD3P31249 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 AC007274.1-201ENST00000439805 662 ntBASIC12.47□□□□□ -0.41
HOXD3P31249 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.47□□□□□ -0.41
HOXD3P31249 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXD3P31249 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.47□□□□□ -0.41
HOXD3P31249 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 AL596325.1-201ENST00000563991 1082 ntBASIC12.47□□□□□ -0.41
HOXD3P31249 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXD3P31249 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXD3P31249 AC061975.2-201ENST00000581722 295 ntBASIC12.47□□□□□ -0.41
HOXD3P31249 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXD3P31249 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXD3P31249 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HOXD3P31249 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXD3P31249 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 AL035456.1-201ENST00000456064 1369 ntBASIC12.46□□□□□ -0.41
HOXD3P31249 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXD3P31249 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXD3P31249 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXD3P31249 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.46□□□□□ -0.41
HOXD3P31249 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms