Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 GGT4P-201ENST00000623672 1708 ntBASIC20.62■□□□□ 0.89
RXRBP28702 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
RXRBP28702 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.62■□□□□ 0.89
RXRBP28702 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
RXRBP28702 KLF2P2-201ENST00000416807 1039 ntBASIC20.62■□□□□ 0.89
RXRBP28702 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC20.62■□□□□ 0.89
RXRBP28702 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.62■□□□□ 0.89
RXRBP28702 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC20.62■□□□□ 0.89
RXRBP28702 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 ZACNP1-201ENST00000612259 710 ntBASIC20.62■□□□□ 0.89
RXRBP28702 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC20.62■□□□□ 0.89
RXRBP28702 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.62■□□□□ 0.89
RXRBP28702 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 BNIP3P1-202ENST00000550043 1585 ntBASIC20.62■□□□□ 0.89
RXRBP28702 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.62■□□□□ 0.89
RXRBP28702 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RXRBP28702 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
RXRBP28702 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 LINC02012-201ENST00000608206 1725 ntBASIC20.61■□□□□ 0.89
RXRBP28702 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RXRBP28702 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.61■□□□□ 0.89
RXRBP28702 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RXRBP28702 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.61■□□□□ 0.89
RXRBP28702 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 AL391256.1-201ENST00000443260 1855 ntBASIC20.61■□□□□ 0.89
RXRBP28702 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 HIST2H2BB-201ENST00000449108 381 ntBASIC20.61■□□□□ 0.89
RXRBP28702 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 GAPDHP40-201ENST00000505218 1006 ntBASIC20.61■□□□□ 0.89
RXRBP28702 FAM86KP-201ENST00000509817 987 ntBASIC20.61■□□□□ 0.89
RXRBP28702 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC20.61■□□□□ 0.89
RXRBP28702 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC20.61■□□□□ 0.89
RXRBP28702 ENPP7P14-201ENST00000621765 1040 ntBASIC20.61■□□□□ 0.89
RXRBP28702 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.61■□□□□ 0.89
RXRBP28702 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RXRBP28702 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
RXRBP28702 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RXRBP28702 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.6■□□□□ 0.89
RXRBP28702 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.6■□□□□ 0.89
RXRBP28702 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RXRBP28702 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.6■□□□□ 0.89
RXRBP28702 AC114812.1-204ENST00000449669 728 ntBASIC20.6■□□□□ 0.89
RXRBP28702 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC20.6■□□□□ 0.89
RXRBP28702 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC20.6■□□□□ 0.89
RXRBP28702 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC20.6■□□□□ 0.89
RXRBP28702 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.6■□□□□ 0.89
RXRBP28702 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RXRBP28702 KRT8P4-201ENST00000509735 1454 ntBASIC20.6■□□□□ 0.89
RXRBP28702 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 PCDHB17P-201ENST00000539533 2393 ntBASIC20.6■□□□□ 0.89
RXRBP28702 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RXRBP28702 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.59■□□□□ 0.89
RXRBP28702 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC20.59■□□□□ 0.89
RXRBP28702 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
RXRBP28702 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC20.59■□□□□ 0.89
RXRBP28702 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.59■□□□□ 0.89
RXRBP28702 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 AC004899.1-201ENST00000424687 1714 ntBASIC20.59■□□□□ 0.89
RXRBP28702 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RXRBP28702 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.59■□□□□ 0.89
RXRBP28702 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 AC090857.1-201ENST00000527400 390 ntBASIC20.59■□□□□ 0.89
RXRBP28702 SAMD11P1-201ENST00000571429 661 ntBASIC20.59■□□□□ 0.89
RXRBP28702 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RXRBP28702 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RXRBP28702 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms