Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL5A3P25940 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL5A3P25940 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 KRT8P19-201ENST00000551916 1455 ntBASIC19.81■□□□□ 0.76
COL5A3P25940 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
COL5A3P25940 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
COL5A3P25940 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
COL5A3P25940 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
COL5A3P25940 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 RN7SL190P-201ENST00000582519 257 ntBASIC19.81■□□□□ 0.76
COL5A3P25940 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.81■□□□□ 0.76
COL5A3P25940 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.81■□□□□ 0.76
COL5A3P25940 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL5A3P25940 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.8■□□□□ 0.76
COL5A3P25940 EIF3FP3-201ENST00000434851 1086 ntBASIC19.8■□□□□ 0.76
COL5A3P25940 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 BX284668.4-201ENST00000453917 508 ntBASIC19.8■□□□□ 0.76
COL5A3P25940 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 RNA5SP486-201ENST00000515961 83 ntBASIC19.8■□□□□ 0.76
COL5A3P25940 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.8■□□□□ 0.76
COL5A3P25940 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 AC005730.2-201ENST00000564549 1184 ntBASIC19.8■□□□□ 0.76
COL5A3P25940 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.8■□□□□ 0.76
COL5A3P25940 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC19.8■□□□□ 0.76
COL5A3P25940 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.8■□□□□ 0.76
COL5A3P25940 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL5A3P25940 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.79■□□□□ 0.76
COL5A3P25940 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.79■□□□□ 0.76
COL5A3P25940 AC106820.3-201ENST00000561653 397 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 NDUFV2P1-201ENST00000596415 907 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 AL451050.2-201ENST00000606967 682 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL5A3P25940 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 POM121L8P-201ENST00000417732 1281 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 POM121L9P-203ENST00000441984 1285 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.79■□□□□ 0.76
COL5A3P25940 MIR3619-201ENST00000579667 83 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.79■□□□□ 0.76
COL5A3P25940 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.79■□□□□ 0.76
COL5A3P25940 BX539320.1-201ENST00000623759 877 ntBASIC19.79■□□□□ 0.76
COL5A3P25940 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL5A3P25940 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms