Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 AC134684.3-201ENST00000641758 218 ntBASIC18.59■□□□□ 0.57
CTDNEP1O95476 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CTDNEP1O95476 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.59■□□□□ 0.57
CTDNEP1O95476 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTDNEP1O95476 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTDNEP1O95476 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CTDNEP1O95476 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.58■□□□□ 0.57
CTDNEP1O95476 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 AZGP1P1-201ENST00000411909 902 ntBASIC18.58■□□□□ 0.56
CTDNEP1O95476 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 HIST3H2BA-201ENST00000436555 524 ntBASIC18.58■□□□□ 0.56
CTDNEP1O95476 AC023141.5-201ENST00000458585 616 ntBASIC18.58■□□□□ 0.56
CTDNEP1O95476 HNRNPUP1-201ENST00000554987 333 ntBASIC18.58■□□□□ 0.56
CTDNEP1O95476 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.58■□□□□ 0.56
CTDNEP1O95476 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CTDNEP1O95476 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CTDNEP1O95476 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.57■□□□□ 0.56
CTDNEP1O95476 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.56■□□□□ 0.56
CTDNEP1O95476 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms