Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.86■□□□□ 0.13
VPS4BO75351 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.86■□□□□ 0.13
VPS4BO75351 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 IGHV3-65-201ENST00000523210 341 ntBASIC15.86■□□□□ 0.13
VPS4BO75351 MIR4745-201ENST00000577608 62 ntBASIC15.86■□□□□ 0.13
VPS4BO75351 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
VPS4BO75351 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 BCAR1-209ENST00000546196 1340 ntBASIC15.86■□□□□ 0.13
VPS4BO75351 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VPS4BO75351 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4BO75351 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS4BO75351 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS4BO75351 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VPS4BO75351 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS4BO75351 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.85■□□□□ 0.13
VPS4BO75351 FAM58CP-201ENST00000435741 640 ntBASIC15.85■□□□□ 0.13
VPS4BO75351 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 AC004877.2-201ENST00000623941 599 ntBASIC15.85■□□□□ 0.13
VPS4BO75351 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 AC016027.1-202ENST00000607927 1699 ntBASIC15.85■□□□□ 0.13
VPS4BO75351 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4BO75351 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
VPS4BO75351 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4BO75351 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.84■□□□□ 0.13
VPS4BO75351 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS4BO75351 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4BO75351 MRPL20P1-201ENST00000400819 433 ntBASIC15.84■□□□□ 0.13
VPS4BO75351 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4BO75351 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4BO75351 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms