Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP1O15259 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.27■□□□□ 0.83
NPHP1O15259 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP1O15259 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP1O15259 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP1O15259 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP1O15259 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP1O15259 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC20.26■□□□□ 0.83
NPHP1O15259 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP1O15259 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP1O15259 MIR4259-201ENST00000584466 101 ntBASIC20.26■□□□□ 0.83
NPHP1O15259 TMEM261P1-201ENST00000604899 340 ntBASIC20.26■□□□□ 0.83
NPHP1O15259 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.26■□□□□ 0.83
NPHP1O15259 PCGF3-213ENST00000620529 1899 ntBASIC20.26■□□□□ 0.83
NPHP1O15259 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
NPHP1O15259 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP1O15259 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP1O15259 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
NPHP1O15259 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP1O15259 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NPHP1O15259 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 CDC14C-201ENST00000428251 1719 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP1O15259 BOLA2P3-201ENST00000404566 256 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 CROCCP4-201ENST00000457096 498 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 AC104989.1-201ENST00000519711 778 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.25■□□□□ 0.83
NPHP1O15259 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP1O15259 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.25■□□□□ 0.83
NPHP1O15259 AC092337.1-201ENST00000568699 1129 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
NPHP1O15259 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 MIR6775-201ENST00000617557 69 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 AL033527.4-201ENST00000641026 673 ntBASIC20.25■□□□□ 0.83
NPHP1O15259 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP1O15259 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP1O15259 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP1O15259 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP1O15259 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP1O15259 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP1O15259 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP1O15259 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
NPHP1O15259 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NPHP1O15259 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NPHP1O15259 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP1O15259 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
NPHP1O15259 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 AC010319.3-201ENST00000597028 470 ntBASIC20.24■□□□□ 0.83
NPHP1O15259 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP1O15259 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP1O15259 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP1O15259 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms