Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 PMS2P1-201ENST00000431037 1228 ntBASIC11.84□□□□□ -0.51
SMKR1H3BMG3 WDR53-204ENST00000433160 887 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 PGM5P2-202ENST00000637225 1043 ntBASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 LINC00528-201ENST00000600723 2160 ntBASIC11.84□□□□□ -0.51
SMKR1H3BMG3 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
SMKR1H3BMG3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
SMKR1H3BMG3 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RCN1P2-201ENST00000398357 915 ntBASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 AC087499.1-201ENST00000418141 1075 ntBASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 MINOS1P3-201ENST00000457048 203 ntBASIC11.83□□□□□ -0.52
SMKR1H3BMG3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 AC011498.5-201ENST00000592027 486 ntBASIC11.83□□□□□ -0.52
SMKR1H3BMG3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms