Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 GGCT-203ENST00000409144 836 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 SLC25A24P2-201ENST00000415059 510 ntBASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 HOMER2P2-201ENST00000451621 847 ntBASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 KRT18P25-201ENST00000508931 1278 ntBASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 FADS2-212ENST00000522639 360 ntTSL 5 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 FADS2-215ENST00000574708 385 ntTSL 3 BASIC20.39■□□□□ 0.85
SHANK3Q9BYB0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 MPRIPP1-201ENST00000452433 1089 ntBASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 SDHD-202ENST00000525291 790 ntTSL 3 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHANK3Q9BYB0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 AC148477.4-201ENST00000613430 1793 ntBASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 ACKR1-201ENST00000368121 1240 ntBASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 MIR648-201ENST00000385046 94 ntBASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 AC073413.1-201ENST00000603927 732 ntBASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 AHCYP2-201ENST00000430630 1300 ntBASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SHANK3Q9BYB0 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 RPS3-201ENST00000278572 907 ntTSL 3 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 HINT2P1-201ENST00000419438 481 ntBASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AC004898.1-201ENST00000451057 766 ntBASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms