Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.99■□□□□ 0.63
BRF1Q92994 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.99■□□□□ 0.63
BRF1Q92994 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRF1Q92994 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRF1Q92994 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
BRF1Q92994 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRF1Q92994 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRF1Q92994 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BRF1Q92994 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.99■□□□□ 0.63
BRF1Q92994 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.99■□□□□ 0.63
BRF1Q92994 HYMAI-201ENST00000635591 3347 ntBASIC18.99■□□□□ 0.63
BRF1Q92994 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 AP001282.1-201ENST00000531301 1499 ntBASIC18.98■□□□□ 0.63
BRF1Q92994 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 AL627223.1-201ENST00000416693 442 ntBASIC18.98■□□□□ 0.63
BRF1Q92994 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.98■□□□□ 0.63
BRF1Q92994 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.98■□□□□ 0.63
BRF1Q92994 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.98■□□□□ 0.63
BRF1Q92994 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
BRF1Q92994 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
BRF1Q92994 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BRF1Q92994 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.97■□□□□ 0.63
BRF1Q92994 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
BRF1Q92994 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.97■□□□□ 0.63
BRF1Q92994 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.97■□□□□ 0.63
BRF1Q92994 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 LINC00554-201ENST00000564841 3011 ntBASIC18.97■□□□□ 0.63
BRF1Q92994 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
BRF1Q92994 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 AL136982.4-201ENST00000437689 1740 ntBASIC18.97■□□□□ 0.63
BRF1Q92994 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BRF1Q92994 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.96■□□□□ 0.63
BRF1Q92994 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
BRF1Q92994 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
BRF1Q92994 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 AC011477.6-201ENST00000604980 1927 ntBASIC18.96■□□□□ 0.63
BRF1Q92994 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BRF1Q92994 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
BRF1Q92994 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms