Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LINC02447-202ENST00000501888 2146 ntBASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.41■□□□□ 0.54
SH3RF1Q7Z6J0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 AL139384.1-201ENST00000612143 3047 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 AC132872.4-202ENST00000622924 2756 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 MIR658-201ENST00000385210 100 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 AL512384.1-201ENST00000406683 331 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 RN7SL752P-201ENST00000463779 287 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 CHCHD2P3-201ENST00000603038 451 ntBASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SH3RF1Q7Z6J0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SH3RF1Q7Z6J0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SH3RF1Q7Z6J0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
SH3RF1Q7Z6J0 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 MIR648-201ENST00000385046 94 ntBASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 WASH4P-201ENST00000564273 1246 ntBASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC073389.1-201ENST00000595595 795 ntBASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC004790.1-201ENST00000612686 536 ntBASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SH3RF1Q7Z6J0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.38■□□□□ 0.53
SH3RF1Q7Z6J0 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms