Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RHBDL3P58872 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.86■□□□□ 0.61
RHBDL3P58872 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
RHBDL3P58872 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RHBDL3P58872 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.86■□□□□ 0.61
RHBDL3P58872 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.86■□□□□ 0.61
RHBDL3P58872 SNX29P1-201ENST00000548357 1007 ntBASIC18.86■□□□□ 0.61
RHBDL3P58872 AC124283.3-201ENST00000570869 594 ntBASIC18.86■□□□□ 0.61
RHBDL3P58872 AC015936.2-201ENST00000593177 259 ntBASIC18.86■□□□□ 0.61
RHBDL3P58872 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.86■□□□□ 0.61
RHBDL3P58872 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDL3P58872 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDL3P58872 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
RHBDL3P58872 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RHBDL3P58872 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDL3P58872 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDL3P58872 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.86■□□□□ 0.61
RHBDL3P58872 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
RHBDL3P58872 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 KRT8P22-201ENST00000562317 1415 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 AL662844.4-201ENST00000606367 2838 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDL3P58872 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 AL596087.1-201ENST00000400979 1969 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC011477.6-201ENST00000604980 1927 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.85■□□□□ 0.61
RHBDL3P58872 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 CROCCP4-201ENST00000457096 498 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.85■□□□□ 0.61
RHBDL3P58872 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.85■□□□□ 0.61
RHBDL3P58872 AC000095.1-201ENST00000603208 874 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 AC133539.2-201ENST00000604757 467 ntBASIC18.85■□□□□ 0.61
RHBDL3P58872 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDL3P58872 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDL3P58872 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.85■□□□□ 0.61
RHBDL3P58872 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDL3P58872 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RHBDL3P58872 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.84■□□□□ 0.61
RHBDL3P58872 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
RHBDL3P58872 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
RHBDL3P58872 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 MIR658-201ENST00000385210 100 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.84■□□□□ 0.61
RHBDL3P58872 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.84■□□□□ 0.61
RHBDL3P58872 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.84■□□□□ 0.61
RHBDL3P58872 MIR5189-201ENST00000577370 114 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 BTNL10-201ENST00000595971 695 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.84■□□□□ 0.61
RHBDL3P58872 MIR6805-201ENST00000615055 62 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 CU634019.7-201ENST00000624153 1185 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 FP236241.2-201ENST00000624906 1185 ntBASIC18.84■□□□□ 0.61
RHBDL3P58872 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.84■□□□□ 0.61
RHBDL3P58872 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDL3P58872 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RHBDL3P58872 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms