Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 AC124067.4-201ENST00000519691 2379 ntBASIC19.72■□□□□ 0.75
NUP98P52948 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP98P52948 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
NUP98P52948 BRWD1P1-201ENST00000401091 371 ntBASIC19.72■□□□□ 0.75
NUP98P52948 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.72■□□□□ 0.75
NUP98P52948 BCYRN1-201ENST00000418539 200 ntBASIC19.72■□□□□ 0.75
NUP98P52948 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.72■□□□□ 0.75
NUP98P52948 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
NUP98P52948 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 FAM8A2P-201ENST00000528813 1142 ntBASIC19.72■□□□□ 0.75
NUP98P52948 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.72■□□□□ 0.75
NUP98P52948 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NUP98P52948 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
NUP98P52948 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NUP98P52948 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.71■□□□□ 0.75
NUP98P52948 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NUP98P52948 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
NUP98P52948 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP98P52948 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
NUP98P52948 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP98P52948 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.74
NUP98P52948 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.7■□□□□ 0.74
NUP98P52948 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP98P52948 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.7■□□□□ 0.74
NUP98P52948 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.7■□□□□ 0.74
NUP98P52948 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP98P52948 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.7■□□□□ 0.74
NUP98P52948 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
NUP98P52948 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP98P52948 RNF165-205ENST00000588679 2904 ntBASIC19.7■□□□□ 0.74
NUP98P52948 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
NUP98P52948 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP98P52948 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 ACTBP8-201ENST00000403258 1108 ntBASIC19.69■□□□□ 0.74
NUP98P52948 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 AP001582.1-201ENST00000525856 295 ntBASIC19.69■□□□□ 0.74
NUP98P52948 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.69■□□□□ 0.74
NUP98P52948 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.69■□□□□ 0.74
NUP98P52948 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC19.69■□□□□ 0.74
NUP98P52948 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 AC092933.1-201ENST00000393644 945 ntBASIC19.69■□□□□ 0.74
NUP98P52948 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NUP98P52948 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.69■□□□□ 0.74
NUP98P52948 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP98P52948 MIR4313-201ENST00000580760 101 ntBASIC19.69■□□□□ 0.74
NUP98P52948 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP98P52948 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms