Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RFX3P48380 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.24■□□□□ 0.03
RFX3P48380 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RFX3P48380 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 AC006449.6-201ENST00000612330 2296 ntBASIC15.24■□□□□ 0.03
RFX3P48380 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.24■□□□□ 0.03
RFX3P48380 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 PAUPAR-201ENST00000630360 2965 ntBASIC15.24■□□□□ 0.03
RFX3P48380 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 AC097376.2-205ENST00000610159 5334 ntBASIC15.23■□□□□ 0.03
RFX3P48380 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 AC132872.4-202ENST00000622924 2756 ntBASIC15.23■□□□□ 0.03
RFX3P48380 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
RFX3P48380 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RFX3P48380 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.23■□□□□ 0.03
RFX3P48380 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 POU5F1P6-201ENST00000466990 990 ntBASIC15.23■□□□□ 0.03
RFX3P48380 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.23■□□□□ 0.03
RFX3P48380 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.23■□□□□ 0.03
RFX3P48380 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.23■□□□□ 0.03
RFX3P48380 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.23■□□□□ 0.03
RFX3P48380 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RFX3P48380 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 WASH6P-202ENST00000359512 1437 ntBASIC15.23■□□□□ 0.03
RFX3P48380 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.23■□□□□ 0.03
RFX3P48380 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.23■□□□□ 0.03
RFX3P48380 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.23■□□□□ 0.03
RFX3P48380 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RFX3P48380 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.22■□□□□ 0.03
RFX3P48380 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RFX3P48380 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.22■□□□□ 0.03
RFX3P48380 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RFX3P48380 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms