Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.89■□□□□ 0.13
CXCL12P48061 CNN2P8-201ENST00000421872 913 ntBASIC15.89■□□□□ 0.13
CXCL12P48061 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.89■□□□□ 0.13
CXCL12P48061 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.89■□□□□ 0.13
CXCL12P48061 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.89■□□□□ 0.13
CXCL12P48061 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.89■□□□□ 0.13
CXCL12P48061 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 RN7SL190P-201ENST00000582519 257 ntBASIC15.89■□□□□ 0.13
CXCL12P48061 AC106872.11-201ENST00000605838 421 ntBASIC15.89■□□□□ 0.13
CXCL12P48061 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.89■□□□□ 0.13
CXCL12P48061 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CXCL12P48061 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.89■□□□□ 0.13
CXCL12P48061 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.89■□□□□ 0.13
CXCL12P48061 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.89■□□□□ 0.13
CXCL12P48061 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 AL607033.1-201ENST00000623900 1599 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.88■□□□□ 0.13
CXCL12P48061 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 AC104306.2-201ENST00000451877 341 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.88■□□□□ 0.13
CXCL12P48061 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.88■□□□□ 0.13
CXCL12P48061 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.88■□□□□ 0.13
CXCL12P48061 AC022137.2-201ENST00000503482 481 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.88■□□□□ 0.13
CXCL12P48061 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 AC060834.1-201ENST00000443027 2032 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 PP12613-201ENST00000424958 2230 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.88■□□□□ 0.13
CXCL12P48061 AL592424.1-201ENST00000563624 1536 ntBASIC15.88■□□□□ 0.13
CXCL12P48061 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CXCL12P48061 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CXCL12P48061 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
CXCL12P48061 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.87■□□□□ 0.13
CXCL12P48061 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CXCL12P48061 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
CXCL12P48061 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 Z93015.1-201ENST00000451718 390 ntBASIC15.87■□□□□ 0.13
CXCL12P48061 PHKG1P2-201ENST00000457537 863 ntBASIC15.87■□□□□ 0.13
CXCL12P48061 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
CXCL12P48061 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.87■□□□□ 0.13
CXCL12P48061 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.87■□□□□ 0.13
CXCL12P48061 AC244452.3-201ENST00000636814 210 ntBASIC15.87■□□□□ 0.13
CXCL12P48061 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CXCL12P48061 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
CXCL12P48061 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CXCL12P48061 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms