Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GPR39-203ENST00000622084 900 ntTSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.78■□□□□ 0.92
COL18A1P39060 AC106886.4-201ENST00000623557 2502 ntBASIC20.78■□□□□ 0.92
COL18A1P39060 AC148477.4-201ENST00000613430 1793 ntBASIC20.78■□□□□ 0.92
COL18A1P39060 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL18A1P39060 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
COL18A1P39060 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL18A1P39060 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.78■□□□□ 0.92
COL18A1P39060 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL18A1P39060 ELK2AP-201ENST00000392510 1007 ntBASIC20.78■□□□□ 0.92
COL18A1P39060 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC20.78■□□□□ 0.92
COL18A1P39060 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC20.78■□□□□ 0.92
COL18A1P39060 AC097724.1-201ENST00000609581 426 ntBASIC20.78■□□□□ 0.92
COL18A1P39060 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL18A1P39060 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL18A1P39060 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
COL18A1P39060 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL18A1P39060 AC022188.1-201ENST00000620960 1664 ntBASIC20.78■□□□□ 0.92
COL18A1P39060 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.78■□□□□ 0.92
COL18A1P39060 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
COL18A1P39060 EIF4HP1-201ENST00000453115 687 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.77■□□□□ 0.92
COL18A1P39060 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC20.77■□□□□ 0.92
COL18A1P39060 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
COL18A1P39060 AC132938.4-201ENST00000623835 848 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 AC015967.2-201ENST00000624092 234 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 AC006435.4-201ENST00000625037 234 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 AL356737.1-201ENST00000634391 234 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.77■□□□□ 0.92
COL18A1P39060 AC006449.6-201ENST00000612330 2296 ntBASIC20.77■□□□□ 0.92
COL18A1P39060 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL18A1P39060 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.77■□□□□ 0.91
COL18A1P39060 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL18A1P39060 MIR648-201ENST00000385046 94 ntBASIC20.77■□□□□ 0.91
COL18A1P39060 KRTAP10-13P-201ENST00000412914 571 ntBASIC20.77■□□□□ 0.91
COL18A1P39060 KLF2P2-201ENST00000416807 1039 ntBASIC20.77■□□□□ 0.91
COL18A1P39060 ETV2-208ENST00000621247 941 ntTSL 5 BASIC20.77■□□□□ 0.91
COL18A1P39060 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC20.77■□□□□ 0.91
COL18A1P39060 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 AL023775.1-201ENST00000454907 1746 ntBASIC20.76■□□□□ 0.91
COL18A1P39060 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 SDCCAG3P2-201ENST00000326105 1023 ntBASIC20.76■□□□□ 0.91
COL18A1P39060 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC20.76■□□□□ 0.91
COL18A1P39060 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 SDHD-202ENST00000525291 790 ntTSL 3 BASIC20.76■□□□□ 0.91
COL18A1P39060 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC20.76■□□□□ 0.91
COL18A1P39060 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 MIR3619-201ENST00000579667 83 ntBASIC20.76■□□□□ 0.91
COL18A1P39060 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.76■□□□□ 0.91
COL18A1P39060 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL18A1P39060 KRT8P19-201ENST00000551916 1455 ntBASIC20.76■□□□□ 0.91
COL18A1P39060 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.76■□□□□ 0.91
COL18A1P39060 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL18A1P39060 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.75■□□□□ 0.91
COL18A1P39060 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.75■□□□□ 0.91
COL18A1P39060 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC20.75■□□□□ 0.91
COL18A1P39060 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC20.75■□□□□ 0.91
COL18A1P39060 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL18A1P39060 RNA5SP486-201ENST00000515961 83 ntBASIC20.75■□□□□ 0.91
COL18A1P39060 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC20.75■□□□□ 0.91
COL18A1P39060 MIR4313-201ENST00000580760 101 ntBASIC20.75■□□□□ 0.91
COL18A1P39060 AC016629.1-201ENST00000596579 586 ntBASIC20.75■□□□□ 0.91
COL18A1P39060 AC073413.1-201ENST00000603927 732 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms