Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AP005019.2-201ENST00000615104 511 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 AL023775.1-201ENST00000454907 1746 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 AL662890.1-201ENST00000396818 632 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 AL133267.1-201ENST00000398220 340 ntBASIC18.95■□□□□ 0.62
COL4A5P29400 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A5P29400 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A5P29400 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL4A5P29400 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A5P29400 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC18.95■□□□□ 0.62
COL4A5P29400 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A5P29400 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL4A5P29400 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
COL4A5P29400 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.94■□□□□ 0.62
COL4A5P29400 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A5P29400 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL4A5P29400 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL4A5P29400 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A5P29400 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.94■□□□□ 0.62
COL4A5P29400 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.94■□□□□ 0.62
COL4A5P29400 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.94■□□□□ 0.62
COL4A5P29400 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.94■□□□□ 0.62
COL4A5P29400 RNA5SP486-201ENST00000515961 83 ntBASIC18.94■□□□□ 0.62
COL4A5P29400 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A5P29400 AP003171.2-201ENST00000528208 925 ntBASIC18.94■□□□□ 0.62
COL4A5P29400 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A5P29400 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.94■□□□□ 0.62
COL4A5P29400 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A5P29400 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.94■□□□□ 0.62
COL4A5P29400 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 MIR33B-201ENST00000385104 96 ntBASIC18.93■□□□□ 0.62
COL4A5P29400 AC016700.1-201ENST00000429424 312 ntBASIC18.93■□□□□ 0.62
COL4A5P29400 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.93■□□□□ 0.62
COL4A5P29400 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 AC091812.3-201ENST00000621362 345 ntBASIC18.93■□□□□ 0.62
COL4A5P29400 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A5P29400 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A5P29400 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A5P29400 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A5P29400 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A5P29400 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A5P29400 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A5P29400 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL4A5P29400 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms