Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IGHV3-42-201ENST00000520410 361 ntBASIC14.8□□□□□ -0.04
MSX1P28360 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.8□□□□□ -0.04
MSX1P28360 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX1P28360 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.8□□□□□ -0.04
MSX1P28360 AC026979.3-201ENST00000607315 403 ntBASIC14.8□□□□□ -0.04
MSX1P28360 AL158211.3-201ENST00000607385 239 ntBASIC14.8□□□□□ -0.04
MSX1P28360 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
MSX1P28360 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 AC008677.1-201ENST00000519230 1561 ntBASIC14.8□□□□□ -0.04
MSX1P28360 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.8□□□□□ -0.04
MSX1P28360 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX1P28360 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MSX1P28360 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
MSX1P28360 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.8□□□□□ -0.04
MSX1P28360 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
MSX1P28360 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 UGT1A2P-201ENST00000454886 866 ntBASIC14.79□□□□□ -0.04
MSX1P28360 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX1P28360 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX1P28360 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 AC005225.4-201ENST00000557330 545 ntBASIC14.79□□□□□ -0.04
MSX1P28360 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX1P28360 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX1P28360 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.79□□□□□ -0.04
MSX1P28360 AC018529.1-201ENST00000613063 361 ntBASIC14.79□□□□□ -0.04
MSX1P28360 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 AL390754.1-201ENST00000619088 582 ntBASIC14.79□□□□□ -0.04
MSX1P28360 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
MSX1P28360 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
MSX1P28360 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
MSX1P28360 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.79□□□□□ -0.04
MSX1P28360 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX1P28360 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
MSX1P28360 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX1P28360 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
MSX1P28360 MIR661-201ENST00000384842 89 ntBASIC14.78□□□□□ -0.04
MSX1P28360 HAUS4P1-201ENST00000406739 1145 ntBASIC14.78□□□□□ -0.04
MSX1P28360 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.78□□□□□ -0.04
MSX1P28360 AL353705.2-201ENST00000428243 662 ntBASIC14.78□□□□□ -0.04
MSX1P28360 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX1P28360 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms