Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 MIR648-201ENST00000385046 94 ntBASIC12.36□□□□□ -0.43
HLA-DMBP28068 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 LBH-204ENST00000406087 559 ntTSL 4 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AC009947.1-201ENST00000444350 727 ntBASIC12.36□□□□□ -0.43
HLA-DMBP28068 KRT18P3-201ENST00000451602 1288 ntBASIC12.36□□□□□ -0.43
HLA-DMBP28068 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.36□□□□□ -0.43
HLA-DMBP28068 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 FAM197Y3-203ENST00000618346 717 ntBASIC12.36□□□□□ -0.43
HLA-DMBP28068 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HLA-DMBP28068 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.36□□□□□ -0.43
HLA-DMBP28068 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 METTL26-205ENST00000397666 726 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 AC007967.2-201ENST00000432613 625 ntBASIC12.35□□□□□ -0.43
HLA-DMBP28068 RNA5SP416-201ENST00000516838 111 ntBASIC12.35□□□□□ -0.43
HLA-DMBP28068 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 AL031432.2-201ENST00000566714 459 ntBASIC12.35□□□□□ -0.43
HLA-DMBP28068 AL928711.1-201ENST00000570165 459 ntBASIC12.35□□□□□ -0.43
HLA-DMBP28068 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 AC021097.1-201ENST00000607902 574 ntBASIC12.35□□□□□ -0.43
HLA-DMBP28068 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.35□□□□□ -0.43
HLA-DMBP28068 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
HLA-DMBP28068 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DMBP28068 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DMBP28068 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DMBP28068 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DMBP28068 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DMBP28068 AC013268.4-201ENST00000637413 2228 ntBASIC12.34□□□□□ -0.43
HLA-DMBP28068 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DMBP28068 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DMBP28068 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DMBP28068 AC104640.1-201ENST00000562617 2109 ntBASIC12.34□□□□□ -0.43
HLA-DMBP28068 U82695.1-201ENST00000635752 1889 ntBASIC12.34□□□□□ -0.43
HLA-DMBP28068 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DMBP28068 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms