Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 HIST3H2BA-201ENST00000436555 524 ntBASIC16.96■□□□□ 0.31
BDNFP23560 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 ZNF890P-202ENST00000530367 1156 ntBASIC16.96■□□□□ 0.31
BDNFP23560 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 AC134407.2-201ENST00000625089 1978 ntBASIC16.96■□□□□ 0.31
BDNFP23560 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
BDNFP23560 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
BDNFP23560 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
BDNFP23560 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
BDNFP23560 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.3
BDNFP23560 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.96■□□□□ 0.3
BDNFP23560 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.96■□□□□ 0.3
BDNFP23560 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
BDNFP23560 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
BDNFP23560 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.95■□□□□ 0.3
BDNFP23560 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 AL118508.1-201ENST00000613502 2345 ntBASIC16.95■□□□□ 0.3
BDNFP23560 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.95■□□□□ 0.3
BDNFP23560 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 AL109936.8-201ENST00000641772 604 ntBASIC16.95■□□□□ 0.3
BDNFP23560 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
BDNFP23560 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
BDNFP23560 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 AL596087.1-201ENST00000400979 1969 ntBASIC16.95■□□□□ 0.3
BDNFP23560 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
BDNFP23560 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.95■□□□□ 0.3
BDNFP23560 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
BDNFP23560 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BDNFP23560 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
BDNFP23560 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
BDNFP23560 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.94■□□□□ 0.3
BDNFP23560 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
BDNFP23560 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms