Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.17e-8■□□□□ 10.8
YBX3P16989 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.595e-7■□□□□ 10.8
YBX3P16989 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.84■■□□□ 1.575e-7■□□□□ 10.8
YBX3P16989 ACACA-225ENST00000612120 566 ntTSL 48.78□□□□□ -12e-6■□□□□ 10.8
YBX3P16989 ACACA-233ENST00000614450 591 ntTSL 46.37□□□□□ -1.392e-6■□□□□ 10.8
YBX3P16989 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.262e-10■□□□□ 10.8
YBX3P16989 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.222e-6■□□□□ 10.8
YBX3P16989 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.96■□□□□ 0.142e-6■□□□□ 10.8
YBX3P16989 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.12e-6■□□□□ 10.8
YBX3P16989 PPP2R5D-201ENST00000230402 2958 ntTSL 215.06■□□□□ 02e-6■□□□□ 10.8
YBX3P16989 PPP2R5D-205ENST00000470467 2567 ntTSL 1 (best)14.15□□□□□ -0.142e-6■□□□□ 10.8
YBX3P16989 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC9.89□□□□□ -0.831e-13■□□□□ 10.8
YBX3P16989 RAF1-202ENST00000416093 962 ntTSL 219.94■□□□□ 0.786e-8■□□□□ 10.8
YBX3P16989 RAF1-203ENST00000423275 2354 ntTSL 219.47■□□□□ 0.716e-8■□□□□ 10.8
YBX3P16989 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.56■□□□□ 0.086e-8■□□□□ 10.8
YBX3P16989 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.086e-8■□□□□ 10.8
YBX3P16989 RAF1-207ENST00000465826 1518 ntTSL 313.34□□□□□ -0.276e-8■□□□□ 10.8
YBX3P16989 RAF1-204ENST00000432427 1831 ntTSL 59.68□□□□□ -0.866e-8■□□□□ 10.8
YBX3P16989 RAF1-210ENST00000491290 572 ntTSL 45.45□□□□□ -1.546e-8■□□□□ 10.8
YBX3P16989 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.98■■■■□ 3.032e-8■□□□□ 10.8
YBX3P16989 NFKBIA-207ENST00000557100 825 ntTSL 322.63■■□□□ 1.212e-8■□□□□ 10.8
YBX3P16989 NFKBIA-210ENST00000557459 780 ntTSL 221.07■□□□□ 0.962e-8■□□□□ 10.8
YBX3P16989 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.922e-8■□□□□ 10.8
YBX3P16989 NFKBIA-203ENST00000554001 1396 ntTSL 520.27■□□□□ 0.842e-8■□□□□ 10.8
YBX3P16989 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC16.23■□□□□ 0.192e-8■□□□□ 10.8
YBX3P16989 NFKBIA-206ENST00000556664 381 ntTSL 215.8■□□□□ 0.122e-8■□□□□ 10.8
YBX3P16989 DROSHA-213ENST00000511778 1261 ntTSL 38.26□□□□□ -1.093e-6■□□□□ 10.8
YBX3P16989 ARL2-205ENST00000531533 281 ntTSL 218.34■□□□□ 0.537e-9■□□□□ 10.8
YBX3P16989 DHRS4-AS1-206ENST00000558423 584 ntTSL 415.52■□□□□ 0.081e-6■□□□□ 10.8
YBX3P16989 DHRS4-AS1-201ENST00000399886 857 ntTSL 313.16□□□□□ -0.31e-6■□□□□ 10.8
YBX3P16989 LARS-211ENST00000508709 633 ntTSL 58.67□□□□□ -1.027e-10■□□□□ 10.8
YBX3P16989 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.04■■■□□ 2.42e-8■□□□□ 10.8
YBX3P16989 FAM136A-204ENST00000450256 936 ntTSL 228.2■■■□□ 2.12e-8■□□□□ 10.8
YBX3P16989 FAM136A-203ENST00000438759 518 ntTSL 327.41■■□□□ 1.982e-8■□□□□ 10.8
YBX3P16989 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.282e-8■□□□□ 10.8
YBX3P16989 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.69■■□□□ 1.222e-8■□□□□ 10.8
YBX3P16989 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.12e-8■□□□□ 10.8
YBX3P16989 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.16■□□□□ 0.662e-8■□□□□ 10.8
YBX3P16989 WRNIP1-201ENST00000380764 1557 ntTSL 2 BASIC15.39■□□□□ 0.052e-8■□□□□ 10.8
YBX3P16989 MAK16-204ENST00000519089 558 ntTSL 414.95□□□□□ -0.022e-8■□□□□ 10.8
YBX3P16989 MAK16-202ENST00000517567 583 ntTSL 312.02□□□□□ -0.492e-8■□□□□ 10.8
YBX3P16989 MAK16-205ENST00000520763 569 ntTSL 1 (best)11.7□□□□□ -0.542e-8■□□□□ 10.8
YBX3P16989 FAM136A-206ENST00000498665 561 ntTSL 29.87□□□□□ -0.832e-8■□□□□ 10.8
YBX3P16989 MAK16-203ENST00000518389 872 ntTSL 57.05□□□□□ -1.282e-8■□□□□ 10.8
YBX3P16989 TUG1-208ENST00000602393 2233 ntTSL 24.58□□□□□ -1.682e-8■□□□□ 10.8
YBX3P16989 TUG1-209ENST00000602971 1599 ntTSL 24.33□□□□□ -1.722e-8■□□□□ 10.8
YBX3P16989 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.49□□□□□ -1.852e-8■□□□□ 10.8
YBX3P16989 TUG1-203ENST00000540687 2744 ntTSL 1 (best)3.26□□□□□ -1.892e-8■□□□□ 10.8
YBX3P16989 VAT1-209ENST00000592388 478 ntTSL 511.1□□□□□ -0.633e-16■□□□□ 10.8
YBX3P16989 TGM2-204ENST00000468262 1862 ntTSL 1 (best)17.19■□□□□ 0.346e-7■□□□□ 10.8
YBX3P16989 MGAT4B-205ENST00000518778 1568 ntTSL 1 (best)26.24■■□□□ 1.792e-7■□□□□ 10.8
YBX3P16989 MGAT4B-214ENST00000520875 964 ntTSL 516.56■□□□□ 0.242e-7■□□□□ 10.8
YBX3P16989 MGAT4B-223ENST00000523382 778 ntTSL 316.56■□□□□ 0.242e-7■□□□□ 10.8
YBX3P16989 MGAT4B-206ENST00000518867 732 ntTSL 510.18□□□□□ -0.782e-7■□□□□ 10.8
YBX3P16989 MGAT4B-207ENST00000518980 983 ntTSL 59.44□□□□□ -0.92e-7■□□□□ 10.8
YBX3P16989 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.02■□□□□ -01e-6■□□□□ 10.8
YBX3P16989 PIGS-201ENST00000268758 2397 ntTSL 214.53□□□□□ -0.081e-6■□□□□ 10.8
YBX3P16989 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.281e-6■□□□□ 10.8
YBX3P16989 CLPTM1L-207ENST00000506641 792 ntTSL 521.56■■□□□ 1.043e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.43■□□□□ 0.542e-8■□□□□ 10.8
YBX3P16989 CLPTM1L-205ENST00000505605 386 ntTSL 216.7■□□□□ 0.263e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-211ENST00000511268 704 ntTSL 215.93■□□□□ 0.143e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-208ENST00000507195 628 ntTSL 514.36□□□□□ -0.113e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-204ENST00000503534 742 ntTSL 214.1□□□□□ -0.153e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-206ENST00000505914 519 ntTSL 313.14□□□□□ -0.313e-7■□□□□ 10.8
YBX3P16989 CLPTM1L-202ENST00000503042 3540 ntTSL 212.29□□□□□ -0.443e-7■□□□□ 10.8
YBX3P16989 LGALS1-205ENST00000472321 546 ntTSL 226.09■■□□□ 1.774e-11■□□□□ 10.8
YBX3P16989 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.569e-11■□□□□ 10.8
YBX3P16989 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -19e-7■□□□□ 10.8
YBX3P16989 UBC-212ENST00000544481 477 ntTSL 417.94■□□□□ 0.464e-14■□□□□ 10.8
YBX3P16989 UBC-203ENST00000535859 582 ntTSL 216.99■□□□□ 0.314e-14■□□□□ 10.8
YBX3P16989 UBC-214ENST00000546271 559 ntTSL 415.91■□□□□ 0.144e-14■□□□□ 10.8
YBX3P16989 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.036e-7■□□□□ 10.8
YBX3P16989 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.16■■□□□ 1.626e-7■□□□□ 10.8
YBX3P16989 AP005263.1-202ENST00000578850 198 ntTSL 225.16■■□□□ 1.626e-7■□□□□ 10.8
YBX3P16989 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC9.68□□□□□ -0.866e-7■□□□□ 10.8
YBX3P16989 NDUFV2-203ENST00000465096 643 ntTSL 26.77□□□□□ -1.336e-7■□□□□ 10.8
YBX3P16989 ADD1-223ENST00000538860 507 ntTSL 318.92■□□□□ 0.628e-11■□□□□ 10.8
YBX3P16989 ADD1-218ENST00000513762 3581 ntTSL 310.79□□□□□ -0.688e-11■□□□□ 10.8
YBX3P16989 ATP5C1-207ENST00000472202 782 ntTSL 28.31□□□□□ -1.089e-11■□□□□ 10.8
YBX3P16989 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.59■■□□□ 1.858e-9■□□□□ 10.8
YBX3P16989 SFXN1-208ENST00000507823 2611 ntTSL 219.17■□□□□ 0.668e-9■□□□□ 10.8
YBX3P16989 SFXN1-210ENST00000513725 597 ntTSL 218.11■□□□□ 0.498e-9■□□□□ 10.8
YBX3P16989 SFXN1-205ENST00000506963 796 ntTSL 312.27□□□□□ -0.458e-9■□□□□ 10.8
YBX3P16989 SFXN1-204ENST00000502865 641 ntTSL 511.62□□□□□ -0.558e-9■□□□□ 10.8
YBX3P16989 SFXN1-206ENST00000507017 572 ntTSL 510□□□□□ -0.818e-9■□□□□ 10.8
YBX3P16989 FLNB-206ENST00000468939 573 ntTSL 215.72■□□□□ 0.112e-6■□□□□ 10.8
YBX3P16989 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC9.82□□□□□ -0.843e-8■□□□□ 10.8
YBX3P16989 NUCB2-213ENST00000531242 639 ntTSL 29.78□□□□□ -0.843e-8■□□□□ 10.8
YBX3P16989 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -13e-8■□□□□ 10.8
YBX3P16989 NUCB2-206ENST00000527735 317 ntTSL 38.35□□□□□ -1.073e-8■□□□□ 10.8
YBX3P16989 NUCB2-205ENST00000527580 701 ntTSL 57.39□□□□□ -1.233e-8■□□□□ 10.8
YBX3P16989 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC27.95■■■□□ 2.073e-10■□□□□ 10.8
YBX3P16989 GANAB-208ENST00000528503 608 ntTSL 214.15□□□□□ -0.143e-17■□□□□ 10.8
YBX3P16989 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.173e-10■□□□□ 10.8
YBX3P16989 JPT2-206ENST00000562684 3185 ntTSL 2 BASIC13.98□□□□□ -0.172e-6■□□□□ 10.8
YBX3P16989 JPT2-201ENST00000248098 3718 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.282e-6■□□□□ 10.8
YBX3P16989 JPT2-205ENST00000562569 458 ntTSL 39.67□□□□□ -0.862e-6■□□□□ 10.8
YBX3P16989 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.353e-14■□□□□ 10.8
YBX3P16989 ACSS2-223ENST00000494727 1030 ntTSL 212.99□□□□□ -0.331e-6■□□□□ 10.8
Retrieved 100 of 29,075 protein–RNA pairs in 274.9 ms