Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL6A1P12109 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A1P12109 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
COL6A1P12109 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.63■□□□□ 0.41
COL6A1P12109 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A1P12109 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
COL6A1P12109 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 LINC01144-201ENST00000626198 1710 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 ACKR1-201ENST00000368121 1240 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 AC091804.1-201ENST00000486888 567 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A1P12109 SCARNA20.5-201ENST00000516991 142 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 AC025279.2-201ENST00000569730 653 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 AC005695.3-201ENST00000614522 232 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.62■□□□□ 0.41
COL6A1P12109 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A1P12109 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A1P12109 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL6A1P12109 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.61■□□□□ 0.41
COL6A1P12109 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A1P12109 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A1P12109 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 MIR4722-201ENST00000578292 60 ntBASIC17.61■□□□□ 0.41
COL6A1P12109 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A1P12109 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
COL6A1P12109 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A1P12109 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL6A1P12109 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A1P12109 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A1P12109 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A1P12109 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms