Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AC092647.4-201ENST00000457211 535 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AC096582.2-201ENST00000510860 516 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AC005622.1-201ENST00000636801 1703 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AL137013.1-201ENST00000432946 1228 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 CYP2A7P1-201ENST00000595391 815 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AL353135.1-201ENST00000606729 504 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 TMEM191A-211ENST00000637163 1067 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AP000867.4-201ENST00000641616 219 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AP006294.2-201ENST00000641667 209 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AL592424.1-201ENST00000563624 1536 ntBASIC11.85□□□□□ -0.51
SMKR1H3BMG3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SMKR1H3BMG3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 LINC00552-201ENST00000625151 2579 ntBASIC11.84□□□□□ -0.51
SMKR1H3BMG3 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SMKR1H3BMG3 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms