Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 AC103702.1-201ENST00000548801 2630 ntBASIC13.1□□□□□ -0.31
FOXA2Q9Y261 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
FOXA2Q9Y261 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 HAUS4P1-201ENST00000406739 1145 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 BX842568.4-201ENST00000421222 227 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 MCCD1P2-201ENST00000423228 335 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 AC093724.1-201ENST00000448659 1027 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 AC245100.5-201ENST00000452108 331 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 AC109635.5-201ENST00000533593 962 ntBASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.09□□□□□ -0.31
FOXA2Q9Y261 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
FOXA2Q9Y261 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 AC011270.2-201ENST00000624293 2550 ntBASIC13.08□□□□□ -0.32
FOXA2Q9Y261 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 NORAD-201ENST00000565493 5339 ntBASIC13.08□□□□□ -0.32
FOXA2Q9Y261 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
FOXA2Q9Y261 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms