Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 MTX1P1-201ENST00000440904 838 ntBASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 HIST2H2BC-201ENST00000498492 580 ntBASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 AC025279.2-201ENST00000569730 653 ntBASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZC3H4Q9UPT8 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 AC091812.3-201ENST00000621362 345 ntBASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
ZC3H4Q9UPT8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 EEF1DP1-201ENST00000585891 896 ntBASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
ZC3H4Q9UPT8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZC3H4Q9UPT8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms