Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AP006288.1-201ENST00000446065 395 ntBASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC004967.1-201ENST00000453589 447 ntBASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC023511.2-201ENST00000618803 211 ntBASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AP001282.1-201ENST00000531301 1499 ntBASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.77■□□□□ 0.28
AP4E1Q9UPM8 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.77■□□□□ 0.27
AP4E1Q9UPM8 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 PAUPAR-201ENST00000630360 2965 ntBASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 AC254562.1-201ENST00000417586 456 ntBASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ALG1L8P-201ENST00000533887 760 ntBASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 AC134407.2-201ENST00000625089 1978 ntBASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
AP4E1Q9UPM8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 MIR1233-2-201ENST00000408138 82 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 MIR1233-1-201ENST00000408722 82 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CNN2P11-201ENST00000429351 262 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 GPS2P2-201ENST00000430745 888 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 AC023141.5-201ENST00000458585 616 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 AC009093.7-201ENST00000623853 1223 ntBASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.75■□□□□ 0.27
AP4E1Q9UPM8 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
AP4E1Q9UPM8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
AP4E1Q9UPM8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms