Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 MRPL20P1-201ENST00000400819 433 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AL031432.2-201ENST00000566714 459 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 AL928711.1-201ENST00000570165 459 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AC134407.2-201ENST00000625089 1978 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 AL589702.1-201ENST00000641229 1509 ntBASIC16.03■□□□□ 0.16
SSU72Q9NP77 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.03■□□□□ 0.16
SSU72Q9NP77 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SSU72Q9NP77 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 GPX1P2-201ENST00000429271 606 ntBASIC16.02■□□□□ 0.16
SSU72Q9NP77 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 AL049597.2-201ENST00000565575 961 ntBASIC16.02■□□□□ 0.16
SSU72Q9NP77 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SSU72Q9NP77 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SSU72Q9NP77 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.02■□□□□ 0.15
SSU72Q9NP77 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SSU72Q9NP77 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.02■□□□□ 0.15
SSU72Q9NP77 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 AC002347.1-201ENST00000569543 541 ntBASIC16.01■□□□□ 0.15
SSU72Q9NP77 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 REXO1L6P-202ENST00000619970 1078 ntBASIC16.01■□□□□ 0.15
SSU72Q9NP77 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.01■□□□□ 0.15
SSU72Q9NP77 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SSU72Q9NP77 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms