Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 GGT3P-204ENST00000453783 1664 ntBASIC14.36□□□□□ -0.11
MMP28Q9H239 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 AC005912.2-201ENST00000619492 2400 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.35□□□□□ -0.11
MMP28Q9H239 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.35□□□□□ -0.11
MMP28Q9H239 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MMP28Q9H239 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 UNC93B7-201ENST00000509439 705 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 IGHV3-52-201ENST00000519770 353 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.35□□□□□ -0.11
MMP28Q9H239 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 AC099336.1-202ENST00000602961 463 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 AC114341.1-201ENST00000618070 349 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.35□□□□□ -0.11
MMP28Q9H239 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
MMP28Q9H239 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MMP28Q9H239 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 REXO1L8P-201ENST00000604378 1897 ntBASIC14.35□□□□□ -0.11
MMP28Q9H239 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.35□□□□□ -0.11
MMP28Q9H239 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MMP28Q9H239 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.35□□□□□ -0.11
MMP28Q9H239 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC097637.2-201ENST00000624096 1997 ntBASIC14.34□□□□□ -0.11
MMP28Q9H239 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC020658.6-201ENST00000623564 1870 ntBASIC14.34□□□□□ -0.11
MMP28Q9H239 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.34□□□□□ -0.11
MMP28Q9H239 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.34□□□□□ -0.11
MMP28Q9H239 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.34□□□□□ -0.11
MMP28Q9H239 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.34□□□□□ -0.11
MMP28Q9H239 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.34□□□□□ -0.11
MMP28Q9H239 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.34□□□□□ -0.11
MMP28Q9H239 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 TMBIM7P-203ENST00000641617 1718 ntBASIC14.34□□□□□ -0.11
MMP28Q9H239 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MMP28Q9H239 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MMP28Q9H239 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
MMP28Q9H239 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms