Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.54■□□□□ 0.24
CDX2Q99626 RN7SL48P-201ENST00000579283 293 ntBASIC16.54■□□□□ 0.24
CDX2Q99626 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 AL805961.1-203ENST00000641078 1258 ntBASIC16.54■□□□□ 0.24
CDX2Q99626 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.54■□□□□ 0.24
CDX2Q99626 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDX2Q99626 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CDX2Q99626 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.53■□□□□ 0.24
CDX2Q99626 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.53■□□□□ 0.24
CDX2Q99626 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.53■□□□□ 0.24
CDX2Q99626 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.53■□□□□ 0.24
CDX2Q99626 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC16.53■□□□□ 0.24
CDX2Q99626 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CDX2Q99626 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.53■□□□□ 0.24
CDX2Q99626 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDX2Q99626 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.52■□□□□ 0.24
CDX2Q99626 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.52■□□□□ 0.24
CDX2Q99626 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CDX2Q99626 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CDX2Q99626 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.52■□□□□ 0.24
CDX2Q99626 AL353637.1-201ENST00000451571 732 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.52■□□□□ 0.24
CDX2Q99626 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.52■□□□□ 0.24
CDX2Q99626 RTN3P1-201ENST00000536295 711 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDX2Q99626 AC013355.1-201ENST00000562625 723 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 AC022748.3-201ENST00000621828 275 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 AC127024.7-201ENST00000625101 200 ntBASIC16.52■□□□□ 0.24
CDX2Q99626 AC092053.1-201ENST00000605787 1936 ntBASIC16.52■□□□□ 0.23
CDX2Q99626 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CDX2Q99626 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.52■□□□□ 0.23
CDX2Q99626 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX2Q99626 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CDX2Q99626 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.52■□□□□ 0.23
CDX2Q99626 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CDX2Q99626 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX2Q99626 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CDX2Q99626 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX2Q99626 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDX2Q99626 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CDX2Q99626 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.51■□□□□ 0.23
CDX2Q99626 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CDX2Q99626 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.51■□□□□ 0.23
CDX2Q99626 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.51■□□□□ 0.23
CDX2Q99626 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.51■□□□□ 0.23
CDX2Q99626 AC021723.1-201ENST00000486306 515 ntBASIC16.51■□□□□ 0.23
CDX2Q99626 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CDX2Q99626 AC103988.2-201ENST00000561804 725 ntBASIC16.51■□□□□ 0.23
CDX2Q99626 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.51■□□□□ 0.23
CDX2Q99626 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDX2Q99626 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms