Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 AC018712.1-201ENST00000455767 687 ntBASIC17.47■□□□□ 0.39
CCDC42Q96M95 AF186996.4-201ENST00000467186 377 ntBASIC17.47■□□□□ 0.39
CCDC42Q96M95 AP002469.2-201ENST00000531724 424 ntBASIC17.47■□□□□ 0.39
CCDC42Q96M95 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 TMBIM7P-203ENST00000641617 1718 ntBASIC17.47■□□□□ 0.39
CCDC42Q96M95 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC42Q96M95 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC42Q96M95 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 AC012313.10-201ENST00000623509 926 ntBASIC17.46■□□□□ 0.39
CCDC42Q96M95 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 TNRC18P2-201ENST00000417666 2714 ntBASIC17.46■□□□□ 0.39
CCDC42Q96M95 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC42Q96M95 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC42Q96M95 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC42Q96M95 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
CCDC42Q96M95 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 AC011477.6-201ENST00000604980 1927 ntBASIC17.45■□□□□ 0.38
CCDC42Q96M95 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 MIR4751-201ENST00000578027 74 ntBASIC17.45■□□□□ 0.38
CCDC42Q96M95 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 AL365330.1-201ENST00000607459 531 ntBASIC17.45■□□□□ 0.38
CCDC42Q96M95 AC117500.6-201ENST00000624871 588 ntBASIC17.45■□□□□ 0.38
CCDC42Q96M95 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC42Q96M95 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC42Q96M95 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms