Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MYO15B-237ENST00000642007 4893 ntBASIC12.16□□□□□ -0.46
LINC00477Q96M19 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
LINC00477Q96M19 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
LINC00477Q96M19 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 PRAL-201ENST00000624952 3286 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC092384.3-202ENST00000564646 2873 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC004870.1-201ENST00000315132 882 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 FAAHP1-202ENST00000446499 1238 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 UNC93B6-202ENST00000528242 690 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC096734.2-201ENST00000562054 433 ntBASIC12.15□□□□□ -0.46
LINC00477Q96M19 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.15□□□□□ -0.46
LINC00477Q96M19 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
LINC00477Q96M19 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
LINC00477Q96M19 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AC126177.1-201ENST00000547829 2218 ntBASIC12.14□□□□□ -0.47
LINC00477Q96M19 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AC016027.1-202ENST00000607927 1699 ntBASIC12.14□□□□□ -0.47
LINC00477Q96M19 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
LINC00477Q96M19 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC12.14□□□□□ -0.47
LINC00477Q96M19 AC092474.2-201ENST00000424288 719 ntBASIC12.14□□□□□ -0.47
LINC00477Q96M19 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms