Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AC106886.4-201ENST00000623557 2502 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 RNF216P1-203ENST00000404404 2427 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 PCDHB19P-201ENST00000570871 2371 ntBASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLIP3Q96DZ5 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AL645728.1-201ENST00000366221 2101 ntBASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 TREML5P-201ENST00000421694 576 ntBASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 INGX-202ENST00000489074 768 ntBASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AC069120.2-201ENST00000524091 540 ntBASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 MIR4453-201ENST00000584019 89 ntBASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CLIP3Q96DZ5 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 FO538757.1-201ENST00000623083 1397 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AC142381.1-201ENST00000426099 345 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 RARRES2P9-201ENST00000565168 469 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 AL390955.2-201ENST00000603032 514 ntBASIC15.66■□□□□ 0.1
CLIP3Q96DZ5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms