Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 AC005622.1-201ENST00000636801 1703 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 REXO1L8P-201ENST00000604378 1897 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 FOXO1B-201ENST00000504678 1527 ntBASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4CQ96CF2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AC073439.1-201ENST00000624121 1774 ntBASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 ALG1L8P-201ENST00000533887 760 ntBASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AL390955.2-201ENST00000603032 514 ntBASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 AC068587.6-202ENST00000641839 5619 ntBASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 LINC02199-201ENST00000506655 2702 ntBASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4CQ96CF2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 PRYP6-201ENST00000514804 343 ntBASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4CQ96CF2 TUBB3P1-201ENST00000405796 1332 ntBASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms