Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 OR7E47P-204ENST00000575924 449 ntBASIC15.59■□□□□ 0.09
VPS33AQ96AX1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 CICP13-201ENST00000422015 2789 ntBASIC15.59■□□□□ 0.09
VPS33AQ96AX1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
VPS33AQ96AX1 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS33AQ96AX1 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 AC007326.2-201ENST00000624224 7579 ntBASIC15.58■□□□□ 0.08
VPS33AQ96AX1 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 ACTL9-202ENST00000612068 1252 ntBASIC15.58■□□□□ 0.08
VPS33AQ96AX1 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS33AQ96AX1 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 RNU1-129P-201ENST00000384064 167 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 MIR1224-201ENST00000408193 85 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 U1.21-201ENST00000580816 167 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 CLEC4GP1-201ENST00000596555 870 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 AL356488.2-201ENST00000602755 427 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 MIR1199-201ENST00000621445 119 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 AC012313.10-201ENST00000623509 926 ntBASIC15.57■□□□□ 0.08
VPS33AQ96AX1 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS33AQ96AX1 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms