Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 AC022494.1-201ENST00000466044 728 ntBASIC16.13■□□□□ 0.17
HMGB4Q8WW32 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 MIR4259-201ENST00000584466 101 ntBASIC16.13■□□□□ 0.17
HMGB4Q8WW32 LINC01115-203ENST00000606068 577 ntBASIC16.13■□□□□ 0.17
HMGB4Q8WW32 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB4Q8WW32 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 AC092552.1-201ENST00000547243 906 ntBASIC16.12■□□□□ 0.17
HMGB4Q8WW32 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 AC133552.6-201ENST00000613406 534 ntBASIC16.12■□□□□ 0.17
HMGB4Q8WW32 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB4Q8WW32 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 KRT223P-202ENST00000449164 1292 ntBASIC16.11■□□□□ 0.17
HMGB4Q8WW32 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CROCCP4-201ENST00000457096 498 ntBASIC16.11■□□□□ 0.17
HMGB4Q8WW32 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms