Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19■□□□□ 0.63
NKX2-3Q8TAU0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 MIR658-201ENST00000385210 100 ntBASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 AL353705.2-201ENST00000428243 662 ntBASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 IGHV3-72-202ENST00000621503 303 ntBASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NKX2-3Q8TAU0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 LINC02447-202ENST00000501888 2146 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AC087499.6-201ENST00000411576 835 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 SPDYE17-201ENST00000412399 783 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 RAB43P1-201ENST00000561790 589 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AC104794.3-201ENST00000566840 1248 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AC009407.1-201ENST00000568958 598 ntBASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NKX2-3Q8TAU0 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AL391825.1-201ENST00000457671 1364 ntBASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC079776.1-201ENST00000401540 1152 ntBASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC009477.1-201ENST00000452936 217 ntBASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NKX2-3Q8TAU0 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms