Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.69■□□□□ 0.58
SHROOM1Q2M3G4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 HLA-V-201ENST00000429037 534 ntBASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 HNRNPUP1-201ENST00000554987 333 ntBASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 AC010319.3-201ENST00000597028 470 ntBASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM1Q2M3G4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 USP32P1-208ENST00000506594 1164 ntBASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 MIR6775-201ENST00000617557 69 ntBASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 REXO1L1P-202ENST00000608646 1974 ntBASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.67■□□□□ 0.58
SHROOM1Q2M3G4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.66■□□□□ 0.58
SHROOM1Q2M3G4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms