Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.65■□□□□ 0.1
FOXA1P55317 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 WASH6P-202ENST00000359512 1437 ntBASIC15.65■□□□□ 0.1
FOXA1P55317 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXA1P55317 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXA1P55317 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 AC068418.2-201ENST00000577309 3703 ntBASIC15.65■□□□□ 0.1
FOXA1P55317 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXA1P55317 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.1
FOXA1P55317 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA1P55317 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.64■□□□□ 0.09
FOXA1P55317 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA1P55317 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
FOXA1P55317 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA1P55317 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA1P55317 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXA1P55317 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA1P55317 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXA1P55317 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXA1P55317 AL138918.1-201ENST00000568306 659 ntBASIC15.64■□□□□ 0.09
FOXA1P55317 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.64■□□□□ 0.09
FOXA1P55317 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA1P55317 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA1P55317 AL513190.1-201ENST00000621254 727 ntBASIC15.64■□□□□ 0.09
FOXA1P55317 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA1P55317 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.64■□□□□ 0.09
FOXA1P55317 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
FOXA1P55317 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA1P55317 PMS2P7-201ENST00000506558 1336 ntBASIC15.64■□□□□ 0.09
FOXA1P55317 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA1P55317 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
FOXA1P55317 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.63■□□□□ 0.09
FOXA1P55317 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 AP002472.1-201ENST00000577490 586 ntBASIC15.63■□□□□ 0.09
FOXA1P55317 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA1P55317 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA1P55317 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA1P55317 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA1P55317 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms