Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-1P43699 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-1P43699 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-1P43699 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-1P43699 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-1P43699 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-1P43699 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 U82695.1-201ENST00000635752 1889 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 NSUN5P1-202ENST00000421140 1535 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 NSUN5P2-203ENST00000457352 1529 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 PMS2P1-201ENST00000431037 1228 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.29□□□□□ -0.28
NKX2-1P43699 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 PRYP5-201ENST00000451909 266 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 AC087163.2-201ENST00000457299 853 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 AC087641.1-201ENST00000557561 1021 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-1P43699 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
NKX2-1P43699 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
NKX2-1P43699 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-1P43699 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-1P43699 AL353732.1-201ENST00000569618 1459 ntBASIC13.29□□□□□ -0.28
NKX2-1P43699 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-1P43699 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
NKX2-1P43699 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 CICP13-201ENST00000422015 2789 ntBASIC13.28□□□□□ -0.28
NKX2-1P43699 SLC22A20-204ENST00000530038 1673 ntBASIC13.28□□□□□ -0.28
NKX2-1P43699 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX2-1P43699 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
NKX2-1P43699 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
NKX2-1P43699 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX2-1P43699 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-1P43699 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-1P43699 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
NKX2-1P43699 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 POM121L3P-201ENST00000419331 1163 ntBASIC13.28□□□□□ -0.28
NKX2-1P43699 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-1P43699 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-1P43699 KRT17P6-201ENST00000453795 1220 ntBASIC13.28□□□□□ -0.28
NKX2-1P43699 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.28□□□□□ -0.28
NKX2-1P43699 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-1P43699 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
NKX2-1P43699 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX2-1P43699 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX2-1P43699 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms