Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 AL512652.2-201ENST00000625156 1716 ntBASIC15.26■□□□□ 0.03
SOX3P41225 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SOX3P41225 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 LINC01225-203ENST00000563550 1244 ntBASIC15.26■□□□□ 0.03
SOX3P41225 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 AC027307.2-201ENST00000591252 911 ntBASIC15.26■□□□□ 0.03
SOX3P41225 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 AC093028.1-201ENST00000622998 982 ntBASIC15.26■□□□□ 0.03
SOX3P41225 AC008267.7-201ENST00000624570 1194 ntBASIC15.26■□□□□ 0.03
SOX3P41225 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SOX3P41225 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.26■□□□□ 0.03
SOX3P41225 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SOX3P41225 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.26■□□□□ 0.03
SOX3P41225 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX3P41225 FAM58DP-201ENST00000428076 619 ntBASIC15.25■□□□□ 0.03
SOX3P41225 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX3P41225 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
SOX3P41225 KRT8P23-201ENST00000560090 1207 ntBASIC15.25■□□□□ 0.03
SOX3P41225 AC004449.1-201ENST00000564240 433 ntBASIC15.25■□□□□ 0.03
SOX3P41225 AL138918.1-201ENST00000568306 659 ntBASIC15.25■□□□□ 0.03
SOX3P41225 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.25■□□□□ 0.03
SOX3P41225 LINC00628-201ENST00000628516 1289 ntBASIC15.25■□□□□ 0.03
SOX3P41225 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.25■□□□□ 0.03
SOX3P41225 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SOX3P41225 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
SOX3P41225 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms