Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 PTCHD3P3-201ENST00000403073 906 ntBASIC15.48■□□□□ 0.07
MSX2P35548 POM121L3P-201ENST00000419331 1163 ntBASIC15.48■□□□□ 0.07
MSX2P35548 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.48■□□□□ 0.07
MSX2P35548 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
MSX2P35548 DUX4L26-201ENST00000489078 1255 ntBASIC15.48■□□□□ 0.07
MSX2P35548 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.48■□□□□ 0.07
MSX2P35548 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.48■□□□□ 0.07
MSX2P35548 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 AL365209.1-201ENST00000624418 6473 ntBASIC15.48■□□□□ 0.07
MSX2P35548 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
MSX2P35548 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 LINC00552-201ENST00000625151 2579 ntBASIC15.47■□□□□ 0.07
MSX2P35548 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.47■□□□□ 0.07
MSX2P35548 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.47■□□□□ 0.07
MSX2P35548 NKAPP1-205ENST00000585790 367 ntBASIC15.47■□□□□ 0.07
MSX2P35548 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.47■□□□□ 0.07
MSX2P35548 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.47■□□□□ 0.07
MSX2P35548 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 AC105250.1-201ENST00000509378 2057 ntBASIC15.47■□□□□ 0.07
MSX2P35548 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
MSX2P35548 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
MSX2P35548 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
MSX2P35548 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.46■□□□□ 0.07
MSX2P35548 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.46■□□□□ 0.07
MSX2P35548 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
MSX2P35548 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.46■□□□□ 0.07
MSX2P35548 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
MSX2P35548 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.46■□□□□ 0.07
MSX2P35548 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.46■□□□□ 0.07
MSX2P35548 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.46■□□□□ 0.07
MSX2P35548 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.46■□□□□ 0.07
MSX2P35548 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
MSX2P35548 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.46■□□□□ 0.07
MSX2P35548 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 NUS1P2-201ENST00000417358 873 ntBASIC15.46■□□□□ 0.07
MSX2P35548 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
MSX2P35548 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms