Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL5A3P25940 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 SLC25A24P2-201ENST00000415059 510 ntBASIC19.88■□□□□ 0.77
COL5A3P25940 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.88■□□□□ 0.77
COL5A3P25940 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL5A3P25940 FLII-221ENST00000578558 2377 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 AC006449.6-201ENST00000612330 2296 ntBASIC19.88■□□□□ 0.77
COL5A3P25940 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL5A3P25940 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.88■□□□□ 0.77
COL5A3P25940 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
COL5A3P25940 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.88■□□□□ 0.77
COL5A3P25940 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.88■□□□□ 0.77
COL5A3P25940 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
COL5A3P25940 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL5A3P25940 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.88■□□□□ 0.77
COL5A3P25940 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.88■□□□□ 0.77
COL5A3P25940 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A3P25940 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 AC018892.3-201ENST00000623986 2499 ntBASIC19.87■□□□□ 0.77
COL5A3P25940 AC022188.1-201ENST00000620960 1664 ntBASIC19.87■□□□□ 0.77
COL5A3P25940 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.87■□□□□ 0.77
COL5A3P25940 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 MIR648-201ENST00000385046 94 ntBASIC19.87■□□□□ 0.77
COL5A3P25940 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.87■□□□□ 0.77
COL5A3P25940 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.87■□□□□ 0.77
COL5A3P25940 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A3P25940 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A3P25940 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.87■□□□□ 0.77
COL5A3P25940 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.87■□□□□ 0.77
COL5A3P25940 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.87■□□□□ 0.77
COL5A3P25940 AP005019.2-201ENST00000615104 511 ntBASIC19.87■□□□□ 0.77
COL5A3P25940 AL354989.2-201ENST00000435838 1540 ntBASIC19.87■□□□□ 0.77
COL5A3P25940 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL5A3P25940 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.87■□□□□ 0.77
COL5A3P25940 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL5A3P25940 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A3P25940 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A3P25940 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL5A3P25940 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
COL5A3P25940 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.86■□□□□ 0.77
COL5A3P25940 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.86■□□□□ 0.77
COL5A3P25940 AP001258.2-201ENST00000529891 490 ntBASIC19.86■□□□□ 0.77
COL5A3P25940 AC023310.1-201ENST00000554836 735 ntBASIC19.86■□□□□ 0.77
COL5A3P25940 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A3P25940 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.86■□□□□ 0.77
COL5A3P25940 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.86■□□□□ 0.77
COL5A3P25940 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
COL5A3P25940 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.86■□□□□ 0.77
COL5A3P25940 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL5A3P25940 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.85■□□□□ 0.77
COL5A3P25940 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.85■□□□□ 0.77
COL5A3P25940 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.85■□□□□ 0.77
COL5A3P25940 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
COL5A3P25940 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.85■□□□□ 0.77
COL5A3P25940 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL5A3P25940 AC106886.4-201ENST00000623557 2502 ntBASIC19.85■□□□□ 0.77
COL5A3P25940 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
COL5A3P25940 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms