Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MYB-241ENST00000616088 3573 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC22.56■■□□□ 1.2
MSH5O43196 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 KRT8P47-201ENST00000604727 1398 ntBASIC22.56■■□□□ 1.2
MSH5O43196 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.56■■□□□ 1.2
MSH5O43196 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 AL132875.1-201ENST00000403623 949 ntBASIC22.56■■□□□ 1.2
MSH5O43196 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.56■■□□□ 1.2
MSH5O43196 AL390879.1-201ENST00000439143 386 ntBASIC22.56■■□□□ 1.2
MSH5O43196 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC22.56■■□□□ 1.2
MSH5O43196 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH5O43196 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.56■■□□□ 1.2
MSH5O43196 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 AC090888.2-201ENST00000559765 1144 ntBASIC22.56■■□□□ 1.2
MSH5O43196 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC22.56■■□□□ 1.2
MSH5O43196 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 CYB561-217ENST00000582997 877 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 LSM12-202ENST00000585388 942 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 AC018638.6-201ENST00000605007 1267 ntBASIC22.56■■□□□ 1.2
MSH5O43196 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
MSH5O43196 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
MSH5O43196 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
MSH5O43196 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
MSH5O43196 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH5O43196 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
MSH5O43196 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
MSH5O43196 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC22.55■■□□□ 1.2
MSH5O43196 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 Y_RNA.505-201ENST00000384489 102 ntBASIC22.55■■□□□ 1.2
MSH5O43196 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
MSH5O43196 LINC02474-202ENST00000441160 1148 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH5O43196 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.55■■□□□ 1.2
MSH5O43196 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC22.55■■□□□ 1.2
MSH5O43196 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC22.55■■□□□ 1.2
MSH5O43196 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 PDPK2P-202ENST00000562415 1191 ntBASIC22.55■■□□□ 1.2
MSH5O43196 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.55■■□□□ 1.2
MSH5O43196 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
MSH5O43196 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC22.55■■□□□ 1.2
MSH5O43196 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 ATF2-207ENST00000409833 1335 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MSH5O43196 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
MSH5O43196 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC22.54■■□□□ 1.2
MSH5O43196 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
MSH5O43196 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 HLA-DRB6-201ENST00000411500 1235 ntBASIC22.54■■□□□ 1.2
MSH5O43196 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 AC021146.10-201ENST00000515628 706 ntBASIC22.54■■□□□ 1.2
MSH5O43196 IGHV3-65-201ENST00000523210 341 ntBASIC22.54■■□□□ 1.2
MSH5O43196 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC22.54■■□□□ 1.2
MSH5O43196 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH5O43196 AC004835.2-201ENST00000603762 682 ntBASIC22.54■■□□□ 1.2
MSH5O43196 AC008667.4-201ENST00000607370 168 ntBASIC22.54■■□□□ 1.2
MSH5O43196 AC245008.1-201ENST00000608123 476 ntBASIC22.54■■□□□ 1.2
MSH5O43196 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC22.54■■□□□ 1.2
MSH5O43196 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms