Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 AC092865.6-201ENST00000642101 219 ntBASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 CICP13-201ENST00000422015 2789 ntBASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMCH1Q9UPQ0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 FDX1P1-201ENST00000449115 551 ntBASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 AC098859.1-201ENST00000502915 1238 ntBASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 AC112191.1-201ENST00000523689 701 ntBASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMCH1Q9UPQ0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 AC136621.1-201ENST00000624017 2304 ntBASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 AL590627.1-203ENST00000421194 1026 ntBASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 RARRES2P8-201ENST00000566335 367 ntBASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 ZNF259P1-201ENST00000407656 1365 ntBASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC19.03■□□□□ 0.64
LIMCH1Q9UPQ0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms