Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AC026150.2-201ENST00000564693 1156 ntBASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AC132872.4-202ENST00000622924 2756 ntBASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 AP003680.1-201ENST00000598970 3660 ntBASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 AC139530.3-201ENST00000620344 690 ntBASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC4Q9NTJ3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC4Q9NTJ3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 AL136982.4-201ENST00000437689 1740 ntBASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SMC4Q9NTJ3 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms