Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM4Q9C037 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM4Q9C037 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM4Q9C037 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM4Q9C037 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 TSEN15P1-201ENST00000423257 515 ntBASIC16.29■□□□□ 0.2
TRIM4Q9C037 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 MIR4745-201ENST00000577608 62 ntBASIC16.29■□□□□ 0.2
TRIM4Q9C037 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 AC005593.1-201ENST00000624894 515 ntBASIC16.29■□□□□ 0.2
TRIM4Q9C037 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM4Q9C037 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM4Q9C037 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TRIM4Q9C037 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms