Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL358472.5-202ENST00000641448 1267 ntBASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 PCGF3-213ENST00000620529 1899 ntBASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAIPQ9BWF2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TRAIPQ9BWF2 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 GAPDHP21-201ENST00000450301 1010 ntBASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 GGT3P-204ENST00000453783 1664 ntBASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AC046158.3-201ENST00000624947 2558 ntBASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAIPQ9BWF2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 CR383656.12-201ENST00000549567 513 ntBASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AC010336.2-201ENST00000564226 506 ntBASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AC004840.1-201ENST00000636359 365 ntBASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAIPQ9BWF2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.68■□□□□ 0.42
TRAIPQ9BWF2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms