Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM43Q96BQ3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM43Q96BQ3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM43Q96BQ3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
TRIM43Q96BQ3 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 UPF3AP2-201ENST00000457924 1132 ntBASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 AC091804.1-201ENST00000486888 567 ntBASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 AC104982.3-201ENST00000581995 514 ntBASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 AC009053.2-201ENST00000563701 2365 ntBASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.33■□□□□ 0.36
TRIM43Q96BQ3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AHCYP2-201ENST00000430630 1300 ntBASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 HINT2P1-201ENST00000419438 481 ntBASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 NUS1P3-201ENST00000423502 862 ntBASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 MIR4706-201ENST00000582134 82 ntBASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM43Q96BQ3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 RPSAP36-202ENST00000494591 1261 ntBASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 AC138951.2-201ENST00000623455 1161 ntBASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM43Q96BQ3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms