Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 AL691432.1-201ENST00000596308 1422 ntBASIC15.69■□□□□ 0.1
LMX1AQ8TE12 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 AC004987.2-201ENST00000395959 1148 ntBASIC15.69■□□□□ 0.1
LMX1AQ8TE12 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ATP5G2P4-201ENST00000442175 420 ntBASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 AC243562.2-201ENST00000561247 970 ntBASIC15.69■□□□□ 0.1
LMX1AQ8TE12 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LMX1AQ8TE12 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 ELK1P1-201ENST00000485699 580 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC092337.1-201ENST00000568699 1129 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 CTBP2P3-201ENST00000585629 1255 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC093726.1-201ENST00000608064 963 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC099568.2-201ENST00000609194 695 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AC009053.2-201ENST00000563701 2365 ntBASIC15.68■□□□□ 0.1
LMX1AQ8TE12 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LMX1AQ8TE12 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AC005052.1-201ENST00000625181 2492 ntBASIC15.67■□□□□ 0.1
LMX1AQ8TE12 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms