Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS52Q8N1B4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 COX5BP8-201ENST00000416911 349 ntBASIC17.56■□□□□ 0.4
VPS52Q8N1B4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 AL844908.2-201ENST00000609461 460 ntBASIC17.56■□□□□ 0.4
VPS52Q8N1B4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS52Q8N1B4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 KRT8P39-201ENST00000396270 1433 ntBASIC17.55■□□□□ 0.4
VPS52Q8N1B4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 BANF1P1-201ENST00000553684 263 ntBASIC17.55■□□□□ 0.4
VPS52Q8N1B4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 DOC2GP-204ENST00000639052 2548 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms